Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_741

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9108 and 9109 are separated by 153 nucleotides9109 and 9110 are separated by 183 nucleotides mRNA_740: 9108 - K13103 TFIP11 tuftelin-interacting protein 11, at 1,767,098 to 1,770,950 9108 mRNA_741: 9109 - K12858 DDX23, PRP28 ATP-dependent RNA helicase DDX23/PRP28, at 1,771,104 to 1,774,231 9109 mRNA_742: 9110 - HMMPfam-SPT2 chromatin protein-PF08243,SMART-SPT2 chromatin protein-SM00784, at 1,774,415 to 1,775,869 9110

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,771,033 - -1.5
1,771,041 + -1.7
1,771,049 + -3.8
1,774,309 + -1.5
1,774,376 + +0.9
1,774,457 - -3.1
1,774,619 + 9110 mRNA_742 0.14 -3.7
1,774,922 - 9110 mRNA_742 0.35 +0.8
1,775,044 - 9110 mRNA_742 0.43 -1.1
1,775,208 - 9110 mRNA_742 0.55 -0.2

Or see this region's nucleotide sequence