Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_753

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9120 and 9121 are separated by 751 nucleotides9121 and 9122 are separated by 278 nucleotides mRNA_752: 9120 - K12822 RBM25, S164 RNA-binding protein 25, at 1,795,161 to 1,797,625 9120 mRNA_753: 9121 - K02737 PSMB5 20S proteasome subunit beta 5, at 1,798,377 to 1,799,752 9121 mRNA_754: 9122 - KOG0143 Iron/ascorbate family oxidoreductases, at 1,800,031 to 1,801,635 9122

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,797,558 + -1.0
1,797,558 - -0.9
1,797,573 - -0.1
1,797,573 + -0.4
1,797,581 - -2.0
1,797,799 + -0.9
1,797,876 + -0.9
1,797,963 - -2.3
1,798,130 + -3.0
1,798,151 + -0.9
1,798,206 + -2.4
1,798,313 + -0.6
1,798,752 + 9121 mRNA_753 0.27 -1.4
1,799,048 + 9121 mRNA_753 0.49 -0.3
1,799,428 - 9121 mRNA_753 0.76 -0.8
1,799,733 - -1.7
1,799,812 - -1.2
1,799,831 + -2.1
1,799,897 - -2.0
1,799,898 - -0.4
1,799,899 - -1.6
1,799,904 - -0.1
1,799,914 - -0.5
1,799,915 - -3.5
1,799,921 - -0.7
1,799,922 + -3.8
1,799,924 + -2.1
1,799,924 + -0.9
1,799,931 + -0.3
1,799,933 + -0.7
1,799,936 + -2.4
1,799,936 + -3.0
1,799,937 + -0.8
1,799,941 + -1.8
1,799,960 - -1.8
1,800,045 + +0.8
1,800,340 - 9122 mRNA_754 0.19 -2.3
1,800,514 - 9122 mRNA_754 0.30 -2.3

Or see this region's nucleotide sequence