Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_755

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9122 and 9123 are separated by 499 nucleotides9123 and 9124 are separated by 89 nucleotides mRNA_754: 9122 - KOG0143 Iron/ascorbate family oxidoreductases, at 1,800,031 to 1,801,635 9122 mRNA_755: 9123 - HMMPfam-Ribosomal protein L9, N-terminal domain-PF01281,SUPERFAMILY--SSF55658, at 1,802,135 to 1,802,908 9123 mRNA_756: 9124 - HMMPfam-Protein of unknown function (DUF3074)-PF11274,SUPERFAMILY--SSF55961, at 1,802,998 to 1,803,902 9124

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,801,231 + 9122 mRNA_754 0.75 +0.3
1,801,588 + -1.9
1,801,687 + -3.9
1,801,701 - -1.2
1,801,845 + -2.0
1,801,848 - -3.9
1,801,849 + -4.0
1,801,938 + -1.1
1,802,277 - 9123 mRNA_755 0.18 +0.8
1,802,279 + 9123 mRNA_755 0.19 -1.4
1,802,545 - 9123 mRNA_755 0.53 -1.1
1,802,721 + 9123 mRNA_755 0.76 +1.4
1,802,852 - -2.3
1,802,863 + -0.3
1,802,895 + +0.3
1,803,020 - +0.7
1,803,051 - +1.8
1,803,618 + 9124 mRNA_756 0.69 +0.9
1,803,638 + 9124 mRNA_756 0.71 -0.3
1,803,727 + 9124 mRNA_756 0.81 -1.0
1,803,756 + 9124 mRNA_756 0.84 -2.5
1,803,880 + -1.9

Or see this region's nucleotide sequence