Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_769

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9136 and 9137 overlap by 2 nucleotides9137 and 9138 are separated by 352 nucleotides mRNA_768: 9136 - Hypothetical Protein, at 1,831,293 to 1,832,129 9136 mRNA_769: 9137 - K08141 MAL MFS transporter, SP family, general alpha glucoside-H+ symporter, at 1,832,128 to 1,834,944 9137 mRNA_770: 9138 - K10765 ALKBH1 alkylated DNA repair protein alkB homolog 1, at 1,835,297 to 1,836,834 9138

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,831,129 - -1.6
1,831,147 + +0.8
1,831,163 + -2.5
1,831,216 + -1.0
1,831,231 - -2.1
1,831,240 + -2.5
1,831,254 + -1.5
1,831,258 - -2.6
1,831,279 - -0.1
1,831,281 + -2.3
1,831,281 - +0.3
1,831,328 + -0.0
1,831,328 + -1.8
1,831,372 - -2.0
1,831,374 - -1.1
1,831,381 - 9136 mRNA_768 0.11 -0.8
1,831,383 - 9136 mRNA_768 0.11 -0.9
1,831,385 - 9136 mRNA_768 0.11 -2.3
1,831,415 + 9136 mRNA_768 0.15 -0.9
1,831,417 - 9136 mRNA_768 0.15 -1.7
1,831,443 + 9136 mRNA_768 0.18 -2.1
1,831,445 + 9136 mRNA_768 0.18 -2.4
1,831,447 + 9136 mRNA_768 0.18 -0.3
1,831,462 + 9136 mRNA_768 0.20 -1.6
1,831,489 - 9136 mRNA_768 0.23 -1.0
1,831,490 + 9136 mRNA_768 0.24 -0.2
1,831,504 + 9136 mRNA_768 0.25 -0.4
1,831,510 - 9136 mRNA_768 0.26 -0.1
1,831,513 - 9136 mRNA_768 0.26 -1.6
1,831,527 - 9136 mRNA_768 0.28 -3.9
1,831,531 + 9136 mRNA_768 0.28 -1.0
1,831,552 + 9136 mRNA_768 0.31 -3.2
1,831,565 + 9136 mRNA_768 0.32 -3.1
1,831,566 + 9136 mRNA_768 0.33 -0.1
1,831,584 - 9136 mRNA_768 0.35 +0.8
1,831,593 - 9136 mRNA_768 0.36 -1.8
1,831,600 + 9136 mRNA_768 0.37 -2.9
1,831,620 - 9136 mRNA_768 0.39 -0.4
1,831,626 + 9136 mRNA_768 0.40 -1.2
1,831,637 + 9136 mRNA_768 0.41 -1.8
1,831,656 + 9136 mRNA_768 0.43 -1.9
1,831,733 + 9136 mRNA_768 0.53 +0.2
1,831,757 - 9136 mRNA_768 0.55 -2.0
1,831,757 + 9136 mRNA_768 0.55 +0.0
1,831,776 + 9136 mRNA_768 0.58 -3.8
1,831,802 + 9136 mRNA_768 0.61 -0.7
1,831,840 + 9136 mRNA_768 0.65 -1.5
1,831,843 - 9136 mRNA_768 0.66 -0.5
1,831,850 - 9136 mRNA_768 0.67 +0.7
1,831,869 + 9136 mRNA_768 0.69 -1.6
1,831,873 + 9136 mRNA_768 0.69 -2.8
1,831,882 - 9136 mRNA_768 0.70 -1.8
1,831,886 + 9136 mRNA_768 0.71 -2.5
1,831,897 + 9136 mRNA_768 0.72 -0.6
1,831,912 - 9136 mRNA_768 0.74 -1.5
1,831,923 + 9136 mRNA_768 0.75 -3.2
1,831,927 + 9136 mRNA_768 0.76 -2.4
1,831,992 - 9136 mRNA_768 0.84 -0.3
1,832,167 + -0.8
1,832,293 + -2.6
1,832,326 - -0.7
1,832,467 - 9137 mRNA_769 0.12 -1.8
1,832,480 + 9137 mRNA_769 0.12 +0.0
1,832,486 + 9137 mRNA_769 0.13 -1.5
1,832,768 + 9137 mRNA_769 0.23 -1.9
1,832,962 + 9137 mRNA_769 0.30 +0.1
1,833,049 + 9137 mRNA_769 0.33 -0.4
1,833,147 + 9137 mRNA_769 0.36 +0.1
1,833,509 - 9137 mRNA_769 0.49 -2.8
1,833,642 - 9137 mRNA_769 0.54 -0.1
1,833,664 + 9137 mRNA_769 0.55 -2.0
1,833,839 - 9137 mRNA_769 0.61 -0.2
1,834,074 - 9137 mRNA_769 0.69 -2.7
1,834,398 + 9137 mRNA_769 0.81 +0.1
1,834,704 + -1.9
1,834,794 + +0.1
1,834,988 - -0.1
1,835,187 + -0.3
1,835,187 + -2.5
1,835,419 + -1.9
1,835,567 + 9138 mRNA_770 0.18 -1.2
1,835,593 + 9138 mRNA_770 0.19 +0.3
1,835,847 + 9138 mRNA_770 0.36 -2.1

Or see this region's nucleotide sequence