Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_833

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9200 and 9201 are separated by 140 nucleotides9201 and 9202 are separated by 314 nucleotides mRNA_832: 9200 - K08835 OXSR1, STK39 serine/threonine-protein kinase OSR1/STK39, at 1,993,730 to 1,995,894 9200 mRNA_833: 9201 - HMMPfam-Homeobox domain-PF00046,ProSiteProfiles-'Homeobox' domain profile.-PS50071,SMART-Homeodomain-SM00389,SUPERFAMILY--SSF46689, at 1,996,035 to 1,997,724 9201 mRNA_834: 9202 - HMMPfam-HIT zinc finger-PF04438,ProSiteProfiles-Zinc finger HIT-type profile.-PS51083,SUPERFAMILY--SSF144232, at 1,998,039 to 1,998,977 9202

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,995,113 - 9200 mRNA_832 0.64 -0.0
1,995,274 - 9200 mRNA_832 0.71 -0.3
1,995,422 + 9200 mRNA_832 0.78 -1.9
1,995,692 + -2.5
1,996,023 + -1.6
1,996,183 - -2.9
1,996,204 + 9201 mRNA_833 0.10 -2.0
1,996,324 - 9201 mRNA_833 0.17 +1.7
1,996,416 - 9201 mRNA_833 0.23 -1.8
1,996,649 + 9201 mRNA_833 0.36 -3.4
1,997,093 - 9201 mRNA_833 0.63 +1.1
1,997,098 + 9201 mRNA_833 0.63 -1.0
1,997,382 + 9201 mRNA_833 0.80 -2.0
1,997,705 - -2.4
1,997,830 + -2.3
1,997,831 - -3.2
1,997,872 + -0.9

Or see this region's nucleotide sequence