Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_867

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9234 and 9235 are separated by 510 nucleotides9235 and 9236 are separated by 412 nucleotides mRNA_866: 9234 - HMMPfam-Cryptococcal mannosyltransferase 1-PF11735, at 2,071,119 to 2,072,862 9234 mRNA_867: 9235 - K17808 ZIM17, DNLZ, Tim15 mitochondrial protein import protein ZIM17, at 2,073,373 to 2,073,740 9235 mRNA_868: 9236 - K14782 AATF, BFR2 protein AATF/BFR2, at 2,074,153 to 2,076,198 9236

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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2,072,476 + 9234 mRNA_866 0.78 -0.7
2,072,637 - 9234 mRNA_866 0.87 -0.7
2,072,712 + -1.1
2,072,718 - +0.6
2,072,731 - -0.4
2,072,750 - -3.3
2,072,764 - -2.2
2,072,766 + +0.2
2,072,797 - -1.3
2,072,921 - -1.6
2,073,074 - -0.4
2,073,332 + -1.6
2,074,081 + +0.7
2,074,087 + -3.8

Or see this region's nucleotide sequence