Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_938

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9305 and 9306 are separated by 456 nucleotides mRNA_937: 9305 - KOG1721 FOG Zn-finger, at 19,341 to 20,725 9305 mRNA_938: 9306 - Hypothetical Protein, at 21,182 to 22,697 9306

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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20,204 - 9305 mRNA_937 0.62 +0.8
20,491 - 9305 mRNA_937 0.83 -0.6
20,492 - 9305 mRNA_937 0.83 -0.1
20,494 + 9305 mRNA_937 0.83 -2.3
21,006 + -1.1
21,108 + -3.4
21,266 + -0.8
21,305 - -2.3
21,436 + 9306 mRNA_938 0.17 -1.1
21,543 - 9306 mRNA_938 0.24 +0.2
21,568 - 9306 mRNA_938 0.25 -1.0
21,587 - 9306 mRNA_938 0.27 -3.9
21,588 + 9306 mRNA_938 0.27 -1.8
21,738 - 9306 mRNA_938 0.37 -2.1
21,982 + 9306 mRNA_938 0.53 -1.8
22,062 - 9306 mRNA_938 0.58 -1.0
22,065 - 9306 mRNA_938 0.58 -2.1
22,126 + 9306 mRNA_938 0.62 -1.3
22,164 - 9306 mRNA_938 0.65 -2.4
22,348 + 9306 mRNA_938 0.77 -0.5
22,381 - 9306 mRNA_938 0.79 -1.9
22,499 - 9306 mRNA_938 0.87 +0.3
22,511 + 9306 mRNA_938 0.88 -0.1
22,596 - +0.6
22,615 - -0.4
22,914 - -2.2
22,920 - -0.3
22,925 + -0.0
22,928 + -0.2
22,947 - -0.9
23,066 + +0.5
23,068 + -3.0
23,157 + -2.2
23,189 - -0.5
23,215 - +0.0
23,216 + -1.4
23,216 + -2.3
23,373 + -1.9
23,374 - -2.9
23,379 - -0.5
23,385 + -2.4
23,406 + -3.2
23,475 - -2.7
23,482 + -1.9
23,528 - -2.2
23,534 + -2.0
23,647 + -0.3

Or see this region's nucleotide sequence