Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_975

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9342 and 9343 are separated by 598 nucleotides mRNA_974: 9342 - K03236 EIF1A translation initiation factor 1A, at 113,366 to 114,313 9342 mRNA_975: 9343 - Hypothetical Protein, at 114,912 to 116,236 9343

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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114,803 + -4.1
114,996 + -3.4
115,092 - 9343 mRNA_975 0.14 -1.0
115,097 + 9343 mRNA_975 0.14 -2.2
115,134 + 9343 mRNA_975 0.17 -1.9
115,411 - 9343 mRNA_975 0.38 -1.9
115,867 + 9343 mRNA_975 0.72 -2.5
115,914 - 9343 mRNA_975 0.76 +0.3
115,996 - 9343 mRNA_975 0.82 +0.2
116,827 + +0.0
116,836 - -1.8
116,863 + -2.4
116,886 + -0.2
116,914 - -2.8
116,997 + -3.2
117,040 + -1.1
117,049 - -0.8
117,186 + -1.1

Or see this region's nucleotide sequence