Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_988

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9355 and 9356 are separated by 153 nucleotides9356 and 9357 are separated by 166 nucleotides mRNA_987: 9355 - K04773 sppA protease IV, at 140,246 to 143,358 9355 mRNA_988: 9356 - BLAST glycerol-3-phosphate O-acyltransferase [Sanghuangporu..., at 143,512 to 144,351 9356 mRNA_989: 9357 - Hypothetical Protein, at 144,518 to 146,452 9357

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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142,663 + 9355 mRNA_987 0.78 -2.7
142,673 - 9355 mRNA_987 0.78 -1.3
142,895 + 9355 mRNA_987 0.85 -0.7
142,963 + 9355 mRNA_987 0.87 -3.0
143,099 - -2.3
143,122 - -0.1
143,283 - -1.6
143,401 - +0.4
143,416 + -2.1
143,434 + -4.5
143,435 + -0.2
143,436 + -0.8
143,735 - 9356 mRNA_988 0.27 -2.8
143,738 - 9356 mRNA_988 0.27 -1.5
144,277 + -0.9
144,431 - -1.8

Or see this region's nucleotide sequence