Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1003
Experiment: 40 hrs No Buoyancy Separation
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
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Per-strain Table
| Position | Strand | Gene | Sysname | Fraction | 40 hrs No Buoyancy Separation |
|---|---|---|---|---|---|
| remove | |||||
| 178,602 | + | +0.9 | |||
| 179,177 | - | -0.3 | |||
| 179,328 | - | -3.0 | |||
| 179,351 | - | -0.7 | |||
| 179,383 | + | -1.6 | |||
| 179,612 | + | -0.9 | |||
| 179,646 | + | -1.4 | |||
| 179,903 | + | 9371 | mRNA_1003 | 0.12 | -0.6 |
| 180,267 | - | 9371 | mRNA_1003 | 0.23 | -2.6 |
| 180,571 | - | 9371 | mRNA_1003 | 0.33 | -1.5 |
| 180,849 | + | 9371 | mRNA_1003 | 0.41 | -1.6 |
| 180,952 | - | 9371 | mRNA_1003 | 0.44 | +2.7 |
| 180,985 | + | 9371 | mRNA_1003 | 0.45 | -1.3 |
| 181,125 | - | 9371 | mRNA_1003 | 0.50 | -0.5 |
| 181,232 | + | 9371 | mRNA_1003 | 0.53 | -0.4 |
| 181,386 | - | 9371 | mRNA_1003 | 0.58 | -1.3 |
| 181,465 | + | 9371 | mRNA_1003 | 0.60 | -2.2 |
| 181,527 | + | 9371 | mRNA_1003 | 0.62 | -2.3 |
| 181,540 | - | 9371 | mRNA_1003 | 0.62 | -3.5 |
| 181,548 | + | 9371 | mRNA_1003 | 0.63 | -2.9 |
| 181,686 | + | 9371 | mRNA_1003 | 0.67 | -0.8 |
| 181,841 | - | 9371 | mRNA_1003 | 0.72 | -2.7 |
| 182,151 | - | 9371 | mRNA_1003 | 0.81 | -1.6 |
| 182,263 | - | 9371 | mRNA_1003 | 0.84 | -3.0 |
| 182,295 | + | 9371 | mRNA_1003 | 0.85 | -1.7 |
| 182,295 | - | 9371 | mRNA_1003 | 0.85 | -1.2 |
| 182,317 | + | 9371 | mRNA_1003 | 0.86 | -1.7 |
| 182,319 | + | 9371 | mRNA_1003 | 0.86 | -0.9 |
| 182,431 | + | 9371 | mRNA_1003 | 0.90 | -2.3 |
| 182,716 | + | -1.7 | |||
| 183,007 | - | -0.8 | |||
| 183,017 | - | -0.7 | |||
| 183,152 | - | -1.4 | |||
| 183,162 | + | -2.2 | |||
| 183,177 | + | -2.1 | |||
| 183,295 | + | -0.4 | |||
| 183,349 | - | -1.6 | |||
| 183,351 | - | -1.6 | |||
| 183,354 | - | -1.2 | |||
| 183,356 | - | -1.4 | |||
| 183,358 | + | -1.8 | |||
| 183,365 | + | -2.2 | |||
| 183,367 | - | -1.0 | |||
| 183,367 | - | -2.4 | |||
| 183,367 | - | -1.3 | |||
| 183,367 | - | -4.8 | |||
| 183,369 | + | -2.3 | |||
| 183,369 | - | -0.2 | |||
| 183,373 | + | +0.3 | |||
| 183,382 | + | -1.5 | |||
| 183,384 | + | -0.5 | |||
| 183,404 | + | -3.0 | |||
| 183,498 | + | -2.6 | |||
| 183,515 | - | +0.5 | |||
| 183,520 | - | -1.6 | |||
| 183,537 | - | -1.6 | |||
| 183,679 | - | -1.9 | |||
| 183,702 | - | -1.5 | |||
| 183,702 | - | +0.2 |
Or see this region's nucleotide sequence