Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1012

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9379 and 9380 are separated by 487 nucleotides9380 and 9381 are separated by 226 nucleotides mRNA_1011: 9379 - Hypothetical Protein, at 203,072 to 203,287 9379 mRNA_1012: 9380 - Hypothetical Protein, at 203,775 to 207,320 9380 mRNA_1013: 9381 - K11761 NPL6, RSC7 chromatin structure-remodeling complex protein RSC7, at 207,547 to 209,466 9381

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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202,834 - -0.0
202,839 - -1.7
202,858 + -0.4
202,865 + -0.4
203,032 - -3.5
203,033 + -0.7
203,035 - -1.3
203,036 + -0.7
203,101 - 9379 mRNA_1011 0.13 -1.6
203,126 - 9379 mRNA_1011 0.25 -1.1
203,131 - 9379 mRNA_1011 0.27 -0.2
203,141 + 9379 mRNA_1011 0.32 -0.7
203,152 + 9379 mRNA_1011 0.37 -1.3
203,154 - 9379 mRNA_1011 0.38 -1.5
203,229 - 9379 mRNA_1011 0.73 +0.1
203,285 + -2.7
203,299 + -0.2
203,306 + -1.4
203,310 + -0.9
203,312 - -0.9
203,314 - -1.0
203,315 + -0.6
203,370 - -1.2
203,415 + -0.2
203,421 + -0.7
203,702 - -3.7
203,837 + -0.0
203,890 - -1.9
204,297 - 9380 mRNA_1012 0.15 +0.9
204,323 - 9380 mRNA_1012 0.15 -2.2
204,582 - 9380 mRNA_1012 0.23 -1.4
204,836 + 9380 mRNA_1012 0.30 -2.7
204,925 + 9380 mRNA_1012 0.32 -2.4
204,955 - 9380 mRNA_1012 0.33 +0.7
205,031 - 9380 mRNA_1012 0.35 -0.6
205,138 + 9380 mRNA_1012 0.38 -2.2
205,165 - 9380 mRNA_1012 0.39 -1.1
205,248 - 9380 mRNA_1012 0.42 -0.0
205,286 - 9380 mRNA_1012 0.43 -0.4
205,294 + 9380 mRNA_1012 0.43 +0.6
205,417 - 9380 mRNA_1012 0.46 -1.9
205,504 + 9380 mRNA_1012 0.49 -3.5
205,519 + 9380 mRNA_1012 0.49 -0.5
205,678 + 9380 mRNA_1012 0.54 -0.7
205,686 - 9380 mRNA_1012 0.54 -0.8
205,940 - 9380 mRNA_1012 0.61 -0.1
205,942 + 9380 mRNA_1012 0.61 -0.5
206,032 - 9380 mRNA_1012 0.64 -0.6
206,115 + 9380 mRNA_1012 0.66 -1.9
206,262 - 9380 mRNA_1012 0.70 -0.9
206,368 - 9380 mRNA_1012 0.73 -1.7
206,395 - 9380 mRNA_1012 0.74 +0.1
206,533 - 9380 mRNA_1012 0.78 -1.6
206,627 + 9380 mRNA_1012 0.80 +0.4
206,695 - 9380 mRNA_1012 0.82 -1.9
206,710 + 9380 mRNA_1012 0.83 -0.1
206,997 + -1.5
207,043 - -1.4
207,134 + -0.1
207,144 - +0.4
207,179 - -0.6
207,238 + -2.2
207,244 - -1.8
207,410 - +1.9
207,457 + -0.1
208,076 - 9381 mRNA_1013 0.28 -0.7
208,158 - 9381 mRNA_1013 0.32 -1.3

Or see this region's nucleotide sequence