Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1031

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9399 and 9400 are separated by 766 nucleotides mRNA_1031: 9399 - Hypothetical Protein, at 243,665 to 244,261 9399 mRNA_1032: 9400 - Hypothetical Protein, at 245,028 to 245,336 9400

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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242,903 - -0.6
242,932 + -0.4
243,494 - -1.0
243,623 - -2.2
243,626 + -0.9
243,692 + -1.9
243,773 - 9399 mRNA_1031 0.18 -0.8
243,995 - 9399 mRNA_1031 0.55 -3.1
244,184 + 9399 mRNA_1031 0.87 -0.4
244,251 + -1.3
244,270 + -1.4
244,296 + -1.3
244,379 - -0.7
244,470 + +0.2
244,515 + -1.4
244,528 - -1.9
244,541 - -2.8
244,543 - -2.7
244,847 + -1.6
244,987 + +0.1
244,992 + -2.6
244,994 + -2.3
244,995 - +0.9
245,246 - 9400 mRNA_1032 0.71 -0.5

Or see this region's nucleotide sequence