Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1062

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9429 and 9430 are separated by 94 nucleotides9430 and 9431 are separated by 622 nucleotides mRNA_1061: 9429 - BLAST heat shock 70 kDa protein 12A [Rhizoctonia solani AG-..., at 308,503 to 311,284 9429 mRNA_1062: 9430 - K10742 DNA2 DNA replication ATP-dependent helicase Dna2, at 311,379 to 314,968 9430 mRNA_1063: 9431 - BLAST DNA replication ATP-dependent helicase Dna2 [Rhod..., at 315,591 to 316,093 9431

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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310,578 - 9429 mRNA_1061 0.75 -0.1
310,646 - 9429 mRNA_1061 0.77 -3.3
310,646 - 9429 mRNA_1061 0.77 -0.9
310,665 + 9429 mRNA_1061 0.78 -3.3
310,707 - 9429 mRNA_1061 0.79 -3.2
310,752 - 9429 mRNA_1061 0.81 -0.9
310,755 - 9429 mRNA_1061 0.81 +2.8
310,758 + 9429 mRNA_1061 0.81 -2.0
310,767 + 9429 mRNA_1061 0.81 -2.6
310,971 + 9429 mRNA_1061 0.89 +0.9
311,062 + -1.6
311,217 + -1.3
311,349 + -0.9
311,349 - -1.3
311,372 + -1.0
311,393 + -0.9
311,905 - 9430 mRNA_1062 0.15 +0.3
312,482 + 9430 mRNA_1062 0.31 -0.7
312,536 + 9430 mRNA_1062 0.32 -1.3
312,913 + 9430 mRNA_1062 0.43 -1.4
312,918 - 9430 mRNA_1062 0.43 +0.1
312,979 - 9430 mRNA_1062 0.45 -2.3
313,090 + 9430 mRNA_1062 0.48 -2.0
313,134 + 9430 mRNA_1062 0.49 -1.3
313,215 - 9430 mRNA_1062 0.51 -2.1
313,227 - 9430 mRNA_1062 0.51 -3.1
313,238 - 9430 mRNA_1062 0.52 -0.6
313,315 + 9430 mRNA_1062 0.54 -0.8
313,420 + 9430 mRNA_1062 0.57 -1.7
313,459 + 9430 mRNA_1062 0.58 -2.2
313,471 + 9430 mRNA_1062 0.58 -0.8
313,497 + 9430 mRNA_1062 0.59 -0.5
313,510 + 9430 mRNA_1062 0.59 -2.7
313,692 + 9430 mRNA_1062 0.64 -1.7
313,960 - 9430 mRNA_1062 0.72 -1.3
314,187 - 9430 mRNA_1062 0.78 -2.3
314,568 + 9430 mRNA_1062 0.89 -2.8
314,610 + -2.3
314,611 - -3.1
314,716 + -0.8
314,833 + -2.4
314,883 - -1.1
314,890 + -0.3
315,026 + -3.3
315,036 + -1.1
315,120 + -0.3
315,148 + -0.1
315,255 - -0.1
315,290 - -1.7
315,416 + -3.2
315,448 + -0.4
315,557 + +0.4
315,702 - 9431 mRNA_1063 0.22 -2.3
315,705 + 9431 mRNA_1063 0.23 -0.4
315,855 - 9431 mRNA_1063 0.52 -3.3
315,881 + 9431 mRNA_1063 0.58 -0.0

Or see this region's nucleotide sequence