Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1088

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9455 and 9456 are separated by 482 nucleotides9456 and 9457 are separated by 159 nucleotides mRNA_1087: 9455 - KOG2793 Putative N2,N2-dimethylguanosine tRNA methyltransferase, at 377,970 to 379,646 9455 mRNA_1088: 9456 - KOG3179 Predicted glutamine synthetase, at 380,129 to 381,362 9456 mRNA_1089: 9457 - K01638 aceB, glcB malate synthase, at 381,522 to 383,960 9457

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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379,147 + 9455 mRNA_1087 0.70 -3.0
379,155 + 9455 mRNA_1087 0.71 -0.3
379,270 - 9455 mRNA_1087 0.78 -0.7
379,737 - -1.6
379,832 + -3.7
379,861 - +0.3
379,865 + -2.5
379,870 - -0.3
379,870 - -1.0
379,995 - -1.8
380,022 + -0.9
380,036 + -4.0
380,044 - -1.0
380,054 + -2.9
380,089 + -1.3
380,174 - -0.5
380,177 + -0.3
380,346 + 9456 mRNA_1088 0.18 -1.1
380,629 - 9456 mRNA_1088 0.41 -0.7
381,055 - 9456 mRNA_1088 0.75 -3.5
381,182 - 9456 mRNA_1088 0.85 -2.8
381,231 + 9456 mRNA_1088 0.89 -1.6
381,239 + -0.5
381,338 + +1.4
381,342 - -2.1
381,356 + -2.0
381,373 + -1.4
381,427 + -0.7
381,448 + -2.4
381,458 + +0.4
381,472 - +0.6
381,597 - -2.5
381,619 + -2.4
381,621 + -0.6
381,642 + -1.0
381,652 + -2.2
381,749 + +0.8
381,763 + -1.9
381,861 - 9457 mRNA_1089 0.14 -1.8
381,921 - 9457 mRNA_1089 0.16 +0.0
382,196 + 9457 mRNA_1089 0.28 -1.5
382,202 + 9457 mRNA_1089 0.28 -2.4

Or see this region's nucleotide sequence