Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1099

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9466 and 9467 are separated by 361 nucleotides9467 and 9468 are separated by 286 nucleotides mRNA_1098: 9466 - Hypothetical Protein, at 400,435 to 400,998 9466 mRNA_1099: 9467 - K08515 VAMP7 vesicle-associated membrane protein 7, at 401,360 to 402,298 9467 mRNA_1100: 9468 - K14679 TRL1 tRNA ligase, at 402,585 to 405,523 9468

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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400,535 + 9466 mRNA_1098 0.18 -1.1
400,656 - 9466 mRNA_1098 0.39 -0.7
400,657 + 9466 mRNA_1098 0.39 -1.2
400,822 + 9466 mRNA_1098 0.69 -1.9
400,947 + +1.1
401,091 - -1.0
401,112 + -3.1
401,123 - -1.1
401,126 - -0.9
401,130 + -0.9
401,252 - -1.9
401,283 - +0.4
401,300 + -1.6
401,537 + 9467 mRNA_1099 0.19 -0.5
401,551 + 9467 mRNA_1099 0.20 -1.7
401,577 - 9467 mRNA_1099 0.23 -3.3
402,490 + -3.8

Or see this region's nucleotide sequence