Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1105

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9472 and 9473 are separated by 953 nucleotides9473 and 9474 are separated by 197 nucleotides mRNA_1104: 9472 - K02540 MCM2 DNA replication licensing factor MCM2, at 413,444 to 416,551 9472 mRNA_1105: 9473 - Hypothetical Protein, at 417,505 to 418,471 9473 mRNA_1106: 9474 - Hypothetical Protein, at 418,669 to 421,245 9474

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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416,824 - -1.7
416,865 + -2.3
416,869 + +0.8
417,742 - 9473 mRNA_1105 0.25 -0.6
418,027 + 9473 mRNA_1105 0.54 -2.2
418,484 - -1.8
418,568 + -3.0
418,615 - +0.2
418,739 - -0.5

Or see this region's nucleotide sequence