Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1129

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9496 and 9497 are separated by 167 nucleotides9497 and 9498 are separated by 701 nucleotides mRNA_1128: 9496 - Interpro Arrestin (or S-antigen), N-terminal domain 0, at 471,353 to 475,855 9496 mRNA_1129: 9497 - K12391 AP1G1 AP-1 complex subunit gamma-1, at 476,023 to 479,289 9497 mRNA_1130: 9498 - KOG1773 Stress responsive protein, at 479,991 to 480,650 9498

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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475,057 + 9496 mRNA_1128 0.82 -0.9
475,127 - 9496 mRNA_1128 0.84 -1.9
475,402 + 9496 mRNA_1128 0.90 +0.1
475,680 + -0.8
475,815 - -1.6
475,862 + -1.3
476,143 - -2.5
476,356 + 9497 mRNA_1129 0.10 -2.3
476,754 - 9497 mRNA_1129 0.22 -4.9
479,372 - -1.9
479,375 - -1.7
479,378 - -0.0
479,381 + -2.9
479,400 - -4.0
479,402 + -1.6
479,402 - -0.2
479,671 - -0.9
479,678 + +0.0
479,703 + -1.0
479,780 + -1.2
479,806 - -0.6
479,979 - -0.7
480,237 - 9498 mRNA_1130 0.37 -2.5

Or see this region's nucleotide sequence