Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1170

Experiment: 40 hrs No Buoyancy Separation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9537 and 9538 are separated by 28 nucleotides9538 and 9539 are separated by 120 nucleotides mRNA_1169: 9537 - K01469 OPLAH, OXP1, oplAH 5-oxoprolinase (ATP-hydrolysing), at 563,547 to 566,148 9537 mRNA_1170: 9538 - K09531 DNAJC11 DnaJ homolog subfamily C member 11, at 566,177 to 568,431 9538 mRNA_1171: 9539 - K07277 SAM50, TOB55, bamA outer membrane protein insertion porin family, at 568,552 to 570,961 9539

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
remove
565,447 - 9537 mRNA_1169 0.73 -1.8
565,545 - 9537 mRNA_1169 0.77 -2.2
565,559 + 9537 mRNA_1169 0.77 -0.1
565,585 - 9537 mRNA_1169 0.78 -0.6
565,744 - 9537 mRNA_1169 0.84 -0.7
565,748 - 9537 mRNA_1169 0.85 +0.6
565,859 - 9537 mRNA_1169 0.89 -0.9
565,946 + +0.9
565,979 + +0.1
566,199 + -1.2
566,238 - -3.0
566,256 - -0.6
566,490 + 9538 mRNA_1170 0.14 +0.0
566,574 + 9538 mRNA_1170 0.18 -1.0
566,936 + 9538 mRNA_1170 0.34 -2.2
567,272 + 9538 mRNA_1170 0.49 -3.7
567,331 - 9538 mRNA_1170 0.51 -0.0
567,487 + 9538 mRNA_1170 0.58 +0.7
567,532 + 9538 mRNA_1170 0.60 -0.3
567,799 - 9538 mRNA_1170 0.72 -2.4
568,245 - -2.2
568,253 + -1.1
568,298 + -0.8
568,565 + -1.8

Or see this region's nucleotide sequence