Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1230

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9598 and 9599 are separated by 174 nucleotides mRNA_1230: 9598 - K03267 ERF3, GSPT peptide chain release factor subunit 3, at 705,934 to 708,882 9598 mRNA_1231: 9599 - K11086 SNRPB, SMB small nuclear ribonucleoprotein B and B', at 709,057 to 710,079 9599

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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705,134 - -2.8
705,537 + -2.4
705,538 + -1.2
705,550 + -1.5
705,832 - -2.2
705,839 - -0.2
705,872 - -0.1
705,873 + -2.7
705,879 - -0.6
708,913 + -1.8
708,925 + -1.6
708,945 + +0.6
709,091 - -1.3

Or see this region's nucleotide sequence