Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1282

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9649 and 9650 are separated by 63 nucleotides9650 and 9651 are separated by 273 nucleotides mRNA_1281: 9649 - HMMPfam-Peptidase M50B-like-PF13398, at 827,341 to 829,667 9649 mRNA_1282: 9650 - Hypothetical Protein, at 829,731 to 830,277 9650 mRNA_1283: 9651 - K02883 RP-L18e, RPL18 large subunit ribosomal protein L18e, at 830,551 to 831,805 9651

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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828,736 + 9649 mRNA_1281 0.60 -1.4
828,744 + 9649 mRNA_1281 0.60 -0.9
828,889 + 9649 mRNA_1281 0.67 -1.0
829,020 + 9649 mRNA_1281 0.72 -3.1
829,232 + 9649 mRNA_1281 0.81 -0.7
829,468 - -1.9
829,803 - 9650 mRNA_1282 0.13 -2.9
830,235 - -1.3
830,240 + -0.2
830,364 + +1.3
830,371 - -0.6

Or see this region's nucleotide sequence