Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1290

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9657 and 9658 are separated by 254 nucleotides9658 and 9659 are separated by 112 nucleotides mRNA_1289: 9657 - K05681 ABCG2, CD338 ATP-binding cassette, subfamily G (WHITE), member 2, at 840,459 to 844,214 9657 mRNA_1290: 9658 - K03872 TCEB1 transcription elongation factor B, polypeptide 1, at 844,469 to 844,987 9658 mRNA_1291: 9659 - KOG3350 Uncharacterized conserved protein, at 845,100 to 846,215 9659

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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844,116 - -2.4
844,456 - -1.0
844,559 - 9658 mRNA_1290 0.17 -3.2
844,863 + 9658 mRNA_1290 0.76 -1.3
844,877 - 9658 mRNA_1290 0.79 -2.1
845,010 - -0.8
845,011 + +0.5
845,019 - -1.0
845,029 + +1.6
845,169 + -1.3
845,448 + 9659 mRNA_1291 0.31 -2.7
845,880 - 9659 mRNA_1291 0.70 -1.8

Or see this region's nucleotide sequence