Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1300

Experiment: 40 hrs No Buoyancy Separation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9667 and 9668 overlap by 17 nucleotides9668 and 9669 are separated by 805 nucleotides mRNA_1299: 9667 - K00600 glyA, SHMT glycine hydroxymethyltransferase, at 860,509 to 862,713 9667 mRNA_1300: 9668 - BLAST polynucleotide 5-hydroxyl-kinase grc3 [Xanthophyllomy..., at 862,697 to 864,122 9668 mRNA_1301: 9669 - K06947 GRC3, NOL9 polynucleotide 5'-hydroxyl-kinase GRC3/NOL9, at 864,928 to 866,257 9669

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
remove
862,352 + 9667 mRNA_1299 0.84 +0.9
862,677 - -0.1
862,783 - -0.5
862,789 - -2.1
862,790 + -0.1
862,792 + -1.1
862,792 - +0.0
862,794 - -3.0
862,805 + -2.3
862,807 + -3.0
862,811 + -3.6
862,811 + -1.4
862,813 - -2.2
862,814 - -1.4
862,814 - +0.2
862,816 + -2.9
862,820 - -2.4
862,821 + +0.5
862,823 + -1.7
862,827 - +0.9
862,830 + -1.4
862,840 - 9668 mRNA_1300 0.10 +0.1
862,848 - 9668 mRNA_1300 0.11 -3.5
862,851 - 9668 mRNA_1300 0.11 +0.0
863,321 + 9668 mRNA_1300 0.44 -1.2

Or see this region's nucleotide sequence