Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1316

Experiment: 40 hrs No Buoyancy Separation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9683 and 9684 are separated by 103 nucleotides mRNA_1315: 9683 - K12813 DHX16 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, at 903,446 to 907,323 9683 mRNA_1316: 9684 - KOG4711 Predicted membrane protein, at 907,427 to 911,419 9684

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
remove
907,384 - -2.8
907,585 - +1.4
907,792 + -0.7
907,836 + 9684 mRNA_1316 0.10 -1.1
908,327 - 9684 mRNA_1316 0.23 -0.4
908,382 + 9684 mRNA_1316 0.24 -1.2
908,391 + 9684 mRNA_1316 0.24 +1.5
908,413 + 9684 mRNA_1316 0.25 -0.4
908,534 - 9684 mRNA_1316 0.28 -1.5
908,564 + 9684 mRNA_1316 0.28 -1.2
909,497 + 9684 mRNA_1316 0.52 -0.3
909,498 - 9684 mRNA_1316 0.52 -2.3
909,530 - 9684 mRNA_1316 0.53 -0.7
909,559 + 9684 mRNA_1316 0.53 -3.7
909,917 - 9684 mRNA_1316 0.62 -1.0
909,943 - 9684 mRNA_1316 0.63 -0.0
909,999 + 9684 mRNA_1316 0.64 +0.7
910,082 + 9684 mRNA_1316 0.66 -2.4
910,541 + 9684 mRNA_1316 0.78 -2.2
910,564 - 9684 mRNA_1316 0.79 -0.2
910,835 + 9684 mRNA_1316 0.85 +0.5
910,954 - 9684 mRNA_1316 0.88 -1.8
911,155 - +1.3
911,576 + -0.2
911,714 + -1.5
911,718 - -2.9
911,719 + -1.3
911,857 + -1.4
911,868 - -2.0
911,997 + -0.6
912,000 - -1.9
912,000 - -0.1
912,007 + -2.0
912,009 - -1.1
912,010 - -0.8
912,015 - +0.4
912,020 + +0.8
912,022 - -0.9
912,023 + -1.9
912,024 + -1.4
912,027 + -0.4
912,033 - -1.8
912,034 + -1.1
912,039 + -0.8
912,053 + -1.2
912,099 - +0.6
912,103 - -2.4
912,105 - -0.4
912,106 + -1.3
912,109 + -1.0
912,111 + -0.5
912,111 - -2.2
912,113 + -1.1
912,115 - -3.2
912,116 - -2.6
912,117 - +0.6
912,118 - -3.1
912,120 - -1.0
912,121 - +0.5
912,123 + -2.0
912,123 - -0.6
912,123 + +0.2
912,123 + -1.2
912,124 - -1.6
912,124 - -2.7
912,125 - -2.7
912,125 - -0.8
912,125 - -0.9
912,125 + -0.6
912,126 + -0.4
912,129 - -1.1
912,129 - -1.0
912,129 - -0.7
912,133 + -3.2
912,136 + -0.2
912,138 - -3.2
912,139 - -0.4
912,140 - -2.2
912,145 - -1.0
912,154 + -0.4
912,161 - -1.4
912,167 + +0.0
912,168 - -2.1
912,175 + -1.1
912,304 + -1.9
912,401 + -1.1

Or see this region's nucleotide sequence