Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1320

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9688 and 9689 are separated by 872 nucleotides mRNA_1320: 9688 - K00384 trxB thioredoxin reductase (NADPH), at 921,443 to 923,748 9688 mRNA_1321: 9689 - K01687 ilvD dihydroxy-acid dehydratase, at 924,621 to 927,018 9689

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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920,784 + -1.4
921,063 + +1.7
923,535 + +1.2
923,550 + -0.1
923,664 - -0.4
923,669 + -2.4
923,681 - -1.7
923,684 + -0.9
923,688 + -1.2
923,691 - -1.3
923,699 - +0.3
923,699 - -0.1
923,704 - -1.8
923,705 - -3.1
923,709 + -2.3
923,709 + -0.1
923,710 + -0.2
923,724 + -1.2
923,817 + -1.9
923,916 - +0.9
923,925 - -0.3
923,930 - -1.5
923,939 - +0.1
923,943 + -0.7
923,950 + -3.5
923,955 + -1.4
923,963 + -2.5
923,964 + -1.2
923,970 - +0.1
923,970 - -1.1
923,975 + -0.7
923,979 - -0.8
924,100 + -3.9
924,163 + -0.7
924,251 - -0.7

Or see this region's nucleotide sequence