Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1332

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9699 and 9700 are separated by 562 nucleotides mRNA_1331: 9699 - KOG2273 Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins, at 11,969 to 15,219 9699 mRNA_1332: 9700 - K00232 E1.3.3.6, ACOX1, ACOX3 acyl-CoA oxidase, at 15,782 to 19,108 9700

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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15,354 - -2.1
15,355 - -3.3
15,359 + -1.0
15,512 - -0.3
15,519 + -1.2
15,580 + -1.9
15,637 + -0.0
15,648 + -1.1
15,654 - -1.7
15,656 - -1.9
15,657 + -3.0
15,663 - -1.1
15,665 - -1.5
15,665 + -2.2
15,667 + -1.2
15,671 + -2.6
15,683 + -1.5
15,684 + -1.7
15,699 + -4.9
15,713 + -0.7
15,792 - -4.4
15,857 + -0.1
15,996 - -2.7
16,078 + -1.0
16,087 - -2.3
16,089 + -1.2
16,122 + 9700 mRNA_1332 0.10 -2.7
16,280 - 9700 mRNA_1332 0.15 -3.4
16,363 - 9700 mRNA_1332 0.17 +0.1
16,505 - 9700 mRNA_1332 0.22 +1.6
16,505 - 9700 mRNA_1332 0.22 -3.1
16,546 + 9700 mRNA_1332 0.23 -3.6
16,581 + 9700 mRNA_1332 0.24 -2.0
16,581 + 9700 mRNA_1332 0.24 -1.5
16,899 + 9700 mRNA_1332 0.34 -4.8
16,980 - 9700 mRNA_1332 0.36 -0.9
17,024 - 9700 mRNA_1332 0.37 -2.0
17,288 - 9700 mRNA_1332 0.45 +0.4
17,370 - 9700 mRNA_1332 0.48 +0.1
17,548 + 9700 mRNA_1332 0.53 -2.4
17,574 - 9700 mRNA_1332 0.54 -1.2
17,841 - 9700 mRNA_1332 0.62 +0.4
17,865 + 9700 mRNA_1332 0.63 -1.2
17,957 + 9700 mRNA_1332 0.65 -0.6
18,002 + 9700 mRNA_1332 0.67 -2.8
18,511 - 9700 mRNA_1332 0.82 -1.1
18,550 - 9700 mRNA_1332 0.83 +0.3
18,573 + 9700 mRNA_1332 0.84 -0.7
18,882 - -2.3
19,111 - -0.0
19,235 - -2.1
19,262 - -0.0
19,291 + -2.7
19,296 - -0.9
19,304 - -1.5
19,406 - -0.4
19,412 - +0.7
19,414 - -2.9
19,420 - -0.4
19,422 + +1.4
19,434 - -1.2
19,442 + +0.2
19,452 + -2.7
19,456 - -2.3
19,461 - -2.9
19,480 - +0.6
19,494 + -0.9
19,495 - -3.5
19,496 + -0.8
19,596 - -0.2
19,625 + -2.4
19,626 + -3.2
19,708 - -2.4
19,769 - -0.6
19,769 - -1.5
19,856 + -2.4
19,859 + -2.2
19,899 - -0.9

Or see this region's nucleotide sequence