Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1340

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9707 and 9708 are separated by 120 nucleotides mRNA_1339: 9707 - Hypothetical Protein, at 33,554 to 34,142 9707 mRNA_1340: 9708 - KOG3968 Atrazine chlorohydrolase/guanine deaminase, at 34,263 to 36,045 9708

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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33,275 - -2.3
33,279 - -1.6
33,291 + -0.1
33,424 - -2.9
33,429 + -2.2
33,532 - +1.9
33,579 - -1.1
33,583 + -1.0
33,596 - -3.6
33,617 + 9707 mRNA_1339 0.11 -0.8
33,627 + 9707 mRNA_1339 0.12 -0.6
33,644 - 9707 mRNA_1339 0.15 -2.8
33,669 - 9707 mRNA_1339 0.20 -2.2
33,697 + 9707 mRNA_1339 0.24 -0.4
33,773 - 9707 mRNA_1339 0.37 -1.5
33,780 - 9707 mRNA_1339 0.38 -1.1
34,141 + -1.3
34,179 + -2.0
34,336 - -2.3
34,340 + -1.8
34,391 - +0.2
34,635 - 9708 mRNA_1340 0.21 -0.9
34,661 + 9708 mRNA_1340 0.22 -0.2
34,945 - 9708 mRNA_1340 0.38 -2.6
35,493 - 9708 mRNA_1340 0.69 -3.6
35,503 - 9708 mRNA_1340 0.70 -0.6
35,811 + 9708 mRNA_1340 0.87 -0.3
35,936 + -2.1
35,950 + -1.5
35,951 - -3.2
36,046 + -1.9
36,191 + +0.7
36,208 - -0.5
36,253 - +0.3
36,379 - -1.4
36,499 + -1.6
36,511 + -2.1
36,584 - -2.4
36,653 + +0.5
36,668 - -0.9
36,833 - +0.4
36,835 - -1.1
36,963 - -0.6
36,990 + -1.1
36,995 + -0.1

Or see this region's nucleotide sequence