Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1366

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9733 and 9734 are separated by 159 nucleotides9734 and 9735 are separated by 351 nucleotides mRNA_1365: 9733 - K17260 ACTR2, ARP2 actin-related protein 2, at 103,522 to 105,237 9733 mRNA_1366: 9734 - K00661 maa maltose O-acetyltransferase, at 105,397 to 106,460 9734 mRNA_1367: 9735 - K03233 EEF1G elongation factor 1-gamma, at 106,812 to 108,790 9735

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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105,327 - +1.5
105,739 - 9734 mRNA_1366 0.32 -0.7
106,049 + 9734 mRNA_1366 0.61 -1.3
106,165 - 9734 mRNA_1366 0.72 -2.9
106,178 + 9734 mRNA_1366 0.73 -0.8
106,579 - -1.1
106,598 + -1.8
106,603 + -3.0
106,605 + -1.3
106,608 - -2.3
106,609 - -1.4
106,612 + -0.4
106,615 - -0.7
106,645 + -1.4
106,653 - +0.9
106,673 + -1.2
106,676 - -1.4
106,817 + -1.9

Or see this region's nucleotide sequence