Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1394

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9761 and 9762 are separated by 12 nucleotides mRNA_1393: 9761 - Hypothetical Protein, at 163,263 to 164,488 9761 mRNA_1394: 9762 - K04907 KCNH4 potassium voltage-gated channel Eag-related subfamily H member 4, at 164,501 to 165,028 9762

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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163,586 - 9761 mRNA_1393 0.26 -1.6
163,730 - 9761 mRNA_1393 0.38 +0.7
164,880 + 9762 mRNA_1394 0.72 -0.0
164,931 - 9762 mRNA_1394 0.81 +0.9
165,244 - -1.4
165,470 + -3.4
165,489 - +0.4
165,693 - -1.3
165,772 - -1.0
165,835 + +0.2
165,942 - -1.7

Or see this region's nucleotide sequence