Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1407

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9775 and 9776 are separated by 693 nucleotides mRNA_1407: 9775 - K02937 RP-L7e, RPL7 large subunit ribosomal protein L7e, at 198,509 to 200,718 9775 mRNA_1408: 9776 - K02936 RP-L7Ae, RPL7A large subunit ribosomal protein L7Ae, at 201,412 to 202,510 9776

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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197,509 - -1.4
198,111 - +0.7
198,275 + -0.4
198,409 - -1.0
198,412 - -0.4
198,417 + -0.7
200,786 - +0.6
200,980 + -0.6
201,107 - -1.9
201,250 - -1.1
201,255 - -0.7
201,279 - -2.4
201,287 + -0.3
201,432 + -1.0

Or see this region's nucleotide sequence