Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1411

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9778 and 9779 are separated by 992 nucleotides9779 and 9780 are separated by 506 nucleotides mRNA_1410: 9778 - K02920 RP-L36e, RPL36 large subunit ribosomal protein L36e, at 203,700 to 204,648 9778 mRNA_1411: 9779 - Hypothetical Protein, at 205,641 to 206,403 9779 mRNA_1412: 9780 - K11699 RDR, RDRP RNA-dependent RNA polymerase, at 206,910 to 211,871 9780

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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204,723 + -2.7
204,733 + -1.4
204,859 - -1.5
204,982 - -3.8
205,004 - -0.7
205,177 - -2.1
205,287 - +0.2
205,433 - -1.5
205,575 + -0.2
205,576 - -1.0
205,578 - -2.4
205,584 + -1.1
205,599 - -0.9
205,720 - 9779 mRNA_1411 0.10 -0.8
205,741 + 9779 mRNA_1411 0.13 +0.7
205,743 + 9779 mRNA_1411 0.13 +0.4
205,911 - 9779 mRNA_1411 0.35 -0.3
206,008 - 9779 mRNA_1411 0.48 -1.7
206,220 + 9779 mRNA_1411 0.76 -1.7
206,326 - 9779 mRNA_1411 0.90 +0.2
206,327 - -0.6
206,353 + -2.9
206,458 - -0.2
206,471 + -2.3
206,608 - +0.3
206,633 + -1.5
206,803 - +1.1
206,968 + -0.1
207,082 - -0.0

Or see this region's nucleotide sequence