Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1413

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9781 and 9782 are separated by 270 nucleotides mRNA_1413: 9781 - KOG1711 Mitochondrial/chloroplast ribosomal protein L22, at 213,856 to 214,954 9781 mRNA_1414: 9782 - K19801 PI4KB phosphatidylinositol 4-kinase B, at 215,225 to 219,858 9782

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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213,119 + -0.7
213,264 - +1.1
213,710 - -1.9
213,710 + -3.0
213,729 + -0.2
213,799 - -1.5
213,848 - -2.9
214,988 - -1.8
214,999 - -0.4
215,020 - -1.9
215,025 + -4.3
215,030 + -3.4
215,159 - -2.1

Or see this region's nucleotide sequence