Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1445

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9812 and 9813 are separated by 138 nucleotides mRNA_1444: 9812 - KOG4173 Alpha-SNAP protein, at 294,219 to 295,156 9812 mRNA_1445: 9813 - K20045 ITSN intersectin, at 295,295 to 301,799 9813

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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294,320 - 9812 mRNA_1444 0.11 -1.3
294,323 - 9812 mRNA_1444 0.11 -2.3
294,485 + 9812 mRNA_1444 0.28 -0.6
294,601 - 9812 mRNA_1444 0.41 +0.3
294,743 - 9812 mRNA_1444 0.56 -4.0
294,744 - 9812 mRNA_1444 0.56 -0.9
294,907 - 9812 mRNA_1444 0.73 -2.8
295,199 - -1.7
295,613 - -0.2
295,619 - -1.6
295,909 - -1.1
295,931 - -1.0
295,948 - 9813 mRNA_1445 0.10 +0.2
295,948 - 9813 mRNA_1445 0.10 -1.0
296,369 + 9813 mRNA_1445 0.17 +0.8
296,490 + 9813 mRNA_1445 0.18 -3.7
296,677 + 9813 mRNA_1445 0.21 -1.4
296,682 + 9813 mRNA_1445 0.21 -1.9
297,395 + 9813 mRNA_1445 0.32 -3.0
297,602 - 9813 mRNA_1445 0.35 -2.8
297,845 + 9813 mRNA_1445 0.39 -0.4
298,121 - 9813 mRNA_1445 0.43 -1.1
298,475 - 9813 mRNA_1445 0.49 -0.5
299,474 - 9813 mRNA_1445 0.64 -2.7
299,857 + 9813 mRNA_1445 0.70 -2.4
299,929 - 9813 mRNA_1445 0.71 -0.2
300,259 - 9813 mRNA_1445 0.76 +0.5
301,371 + -0.9
301,391 + -2.0
301,527 - -3.2
301,647 - -1.5
301,666 + -2.4
301,689 - -0.3
301,694 + -1.0
301,695 - -3.6
301,697 + -2.0
301,703 - -1.6
301,785 - -3.2
301,793 - -1.1
301,801 - -1.0
301,804 - -0.7
301,810 - -0.1
301,817 + -0.4
301,822 + -0.4
301,822 + +1.4
301,831 - -1.3
301,838 - -1.9
301,846 - -1.1
301,848 + -0.6
301,938 - -1.4
301,972 - -1.3
302,127 - -4.3
302,264 + +0.0
302,284 + -3.4
302,403 - -1.3
302,446 - -2.0
302,461 + -5.0
302,484 + -0.7
302,502 - +0.3
302,512 - -3.0
302,535 - -3.2
302,587 - -2.1
302,594 + -1.0
302,650 + -2.6
302,682 + -2.6
302,704 - -1.3
302,726 + -2.3
302,740 - +0.2
302,797 + -3.4

Or see this region's nucleotide sequence