Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1446

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9814 and 9815 are separated by 687 nucleotides mRNA_1446: 9814 - BLAST Mucin-17 [Rhizoctonia solani], at 303,145 to 306,587 9814 mRNA_1447: 9815 - ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044, at 307,275 to 311,482 9815

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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302,264 + +0.0
302,284 + -3.4
302,403 - -1.3
302,446 - -2.0
302,461 + -5.0
302,484 + -0.7
302,502 - +0.3
302,512 - -3.0
302,535 - -3.2
302,587 - -2.1
302,594 + -1.0
302,650 + -2.6
302,682 + -2.6
302,704 - -1.3
302,726 + -2.3
302,740 - +0.2
302,797 + -3.4
302,828 + +0.2
302,836 - -4.1
302,844 - -0.7
302,844 - -2.6
302,844 - -0.5
302,851 - -0.7
302,854 + -1.1
302,859 + -3.1
302,860 - -2.3
302,861 - +0.4
302,862 + -1.4
302,868 - -1.5
302,874 - -0.4
302,889 + -1.8
302,890 - -0.9
302,914 - -1.5
302,916 + -2.5
302,931 + -1.1
302,931 - -0.4
302,933 - -2.4
302,933 - -0.7
302,933 - +1.2
302,938 + -1.6
302,939 + -1.9
302,944 - +0.2
302,947 + -1.0
302,950 - -1.4
302,950 + -0.7
302,951 - -0.9
302,955 + -1.1
302,957 + +1.0
302,959 - -0.3
302,959 + -0.5
302,959 - -1.1
302,964 + +0.2
302,978 + +0.7
303,083 + -2.0
303,091 + +0.9
303,099 + -1.8
303,102 - -1.5
303,106 + -2.2
304,148 - 9814 mRNA_1446 0.29 -1.6
306,550 + -2.3
306,798 + -3.4
307,047 - -1.8
307,059 + -2.9
307,214 + +0.7
307,215 - -1.0
307,518 + -0.7

Or see this region's nucleotide sequence