Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1475

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9842 and 9843 are separated by 478 nucleotides mRNA_1474: 9842 - Hypothetical Protein, at 388,451 to 391,356 9842 mRNA_1475: 9843 - K07374 TUBA tubulin alpha, at 391,835 to 393,525 9843

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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391,012 + 9842 mRNA_1474 0.88 +0.0
391,137 - +0.1
391,292 + -0.6
391,424 - +0.4
391,445 + -0.1
391,445 - -0.4
391,567 + -0.2
391,588 - -0.1
391,594 + +0.4
393,511 - +1.1
393,817 - -1.6
393,828 - +1.9
394,130 + -1.0
394,130 + -2.1
394,142 + -2.6
394,283 + -1.9
394,284 - -2.0
394,288 + -0.8
394,310 + -0.5
394,315 + -0.7
394,315 - -2.9
394,451 - -1.5
394,458 - -1.0
394,462 - -1.7
394,491 + -2.3

Or see this region's nucleotide sequence