Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1519

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9886 and 9887 are separated by 458 nucleotides9887 and 9888 are separated by 316 nucleotides mRNA_1518: 9886 - K03521 fixA, etfB electron transfer flavoprotein beta subunit, at 496,923 to 498,027 9886 mRNA_1519: 9887 - K03434 PIGL N-acetylglucosaminylphosphatidylinositol deacetylase, at 498,486 to 499,593 9887 mRNA_1520: 9888 - K00765 hisG ATP phosphoribosyltransferase, at 499,910 to 501,221 9888

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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498,174 - -3.4
498,175 - -0.9
498,180 - -2.7
498,181 - -0.1
498,320 + -0.1
498,322 - -1.2
498,334 - -0.7
498,338 - -1.6
498,339 - -1.4
498,340 + -1.7
498,343 + +1.4
498,658 + 9887 mRNA_1519 0.16 -2.3
498,737 - 9887 mRNA_1519 0.23 -3.3
498,737 - 9887 mRNA_1519 0.23 -0.4
499,643 + -1.1
499,653 + -3.7
499,673 + -2.0
499,673 + -2.5
499,790 + -1.6
499,791 + -1.0
499,794 - -2.1

Or see this region's nucleotide sequence