Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1537

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9904 and 9905 are separated by 337 nucleotides9905 and 9906 are separated by 254 nucleotides mRNA_1536: 9904 - K19783 HCS1 DNA polymerase alpha-associated DNA helicase A, at 534,766 to 537,382 9904 mRNA_1537: 9905 - K05284 PIGM phosphatidylinositol glycan, class M, at 537,720 to 539,172 9905 mRNA_1538: 9906 - K20307 TRAPPC10, TRS130 trafficking protein particle complex subunit 10, at 539,427 to 544,024 9906

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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536,840 + 9904 mRNA_1536 0.79 -2.1
536,970 - 9904 mRNA_1536 0.84 -0.9
537,012 + 9904 mRNA_1536 0.86 -2.0
537,426 + -1.6
537,432 + +0.3
537,434 - -2.2
537,437 + -2.4
537,554 - -1.5
537,571 + -0.8
537,571 + -0.5
537,738 - -1.7
538,679 + 9905 mRNA_1537 0.66 -1.0
539,181 - -1.0
539,181 - -0.7
539,181 - -0.2
539,183 + -1.8
539,186 + -2.1
539,191 - -0.5
539,201 - -2.1
539,203 - -2.7
539,208 - -1.5
539,353 + -1.4
539,359 - -0.1
539,359 - -0.1

Or see this region's nucleotide sequence