Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1552

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9919 and 9920 are separated by 385 nucleotides9920 and 9921 are separated by 104 nucleotides mRNA_1551: 9919 - HMMPfam-Ferritin-like domain-PF13668,SUPERFAMILY--SSF47240, at 571,932 to 573,047 9919 mRNA_1552: 9920 - K03115 CSNK2B casein kinase II subunit beta, at 573,433 to 575,580 9920 mRNA_1553: 9921 - KOG1729 FYVE finger containing protein, at 575,685 to 583,746 9921

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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572,547 + 9919 mRNA_1551 0.55 -1.6
572,564 - 9919 mRNA_1551 0.57 -2.6
572,685 + 9919 mRNA_1551 0.67 +0.8
572,882 - 9919 mRNA_1551 0.85 -1.6
572,899 + 9919 mRNA_1551 0.87 -0.9
573,586 + -0.3
573,648 + 9920 mRNA_1552 0.10 -1.8
573,680 - 9920 mRNA_1552 0.11 -2.6
573,988 - 9920 mRNA_1552 0.26 +0.1
575,474 - -1.6
575,486 - -0.2
575,497 + -1.2
575,615 + -1.4
575,628 + -1.4
575,630 - +0.0
575,630 + +0.0
575,651 - -0.4
575,768 - -0.8
575,778 + +0.5
575,781 + -2.8
575,785 - +1.7
575,787 + -2.7
575,958 + -2.3
576,079 - -1.4
576,243 + +0.9
576,501 - 9921 mRNA_1553 0.10 -0.3

Or see this region's nucleotide sequence