Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1553

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9920 and 9921 are separated by 104 nucleotides9921 and 9922 are separated by 84 nucleotides mRNA_1552: 9920 - K03115 CSNK2B casein kinase II subunit beta, at 573,433 to 575,580 9920 mRNA_1553: 9921 - KOG1729 FYVE finger containing protein, at 575,685 to 583,746 9921 mRNA_1554: 9922 - KOG1611 Predicted short chain-type dehydrogenase, at 583,831 to 584,732 9922

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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575,474 - -1.6
575,486 - -0.2
575,497 + -1.2
575,615 + -1.4
575,628 + -1.4
575,630 - +0.0
575,630 + +0.0
575,651 - -0.4
575,768 - -0.8
575,778 + +0.5
575,781 + -2.8
575,785 - +1.7
575,787 + -2.7
575,958 + -2.3
576,079 - -1.4
576,243 + +0.9
576,501 - 9921 mRNA_1553 0.10 -0.3
576,662 - 9921 mRNA_1553 0.12 -0.3
576,699 + 9921 mRNA_1553 0.13 -0.6
577,408 + 9921 mRNA_1553 0.21 -0.5
577,439 + 9921 mRNA_1553 0.22 -0.1
577,545 - 9921 mRNA_1553 0.23 -0.4
577,822 - 9921 mRNA_1553 0.27 +2.2
577,921 + 9921 mRNA_1553 0.28 -1.6
577,961 - 9921 mRNA_1553 0.28 -1.9
577,963 - 9921 mRNA_1553 0.28 -2.5
577,981 - 9921 mRNA_1553 0.28 -0.9
577,988 + 9921 mRNA_1553 0.29 -3.3
577,990 - 9921 mRNA_1553 0.29 -0.6
577,991 - 9921 mRNA_1553 0.29 -2.3
577,993 + 9921 mRNA_1553 0.29 -3.4
577,998 + 9921 mRNA_1553 0.29 -1.2
578,001 + 9921 mRNA_1553 0.29 -2.4
578,020 + 9921 mRNA_1553 0.29 -3.3
578,112 + 9921 mRNA_1553 0.30 -2.1
578,151 - 9921 mRNA_1553 0.31 -3.1
578,169 - 9921 mRNA_1553 0.31 -2.0
578,433 + 9921 mRNA_1553 0.34 -1.8
578,438 + 9921 mRNA_1553 0.34 -1.5
578,447 - 9921 mRNA_1553 0.34 -1.5
578,878 + 9921 mRNA_1553 0.40 -1.2
579,131 - 9921 mRNA_1553 0.43 -2.4
579,308 - 9921 mRNA_1553 0.45 -1.9
579,607 - 9921 mRNA_1553 0.49 +0.5
579,762 - 9921 mRNA_1553 0.51 -1.2
579,867 - 9921 mRNA_1553 0.52 +0.3
581,045 + 9921 mRNA_1553 0.66 +0.1
581,071 + 9921 mRNA_1553 0.67 +1.7
581,185 - 9921 mRNA_1553 0.68 -0.5
581,372 + 9921 mRNA_1553 0.71 -4.0
581,484 + 9921 mRNA_1553 0.72 -3.9
581,502 - 9921 mRNA_1553 0.72 -2.3
581,504 - 9921 mRNA_1553 0.72 -0.9
581,506 + 9921 mRNA_1553 0.72 -3.1
581,521 + 9921 mRNA_1553 0.72 -0.3
581,529 - 9921 mRNA_1553 0.72 -0.8
581,530 + 9921 mRNA_1553 0.73 -0.8
581,532 + 9921 mRNA_1553 0.73 +0.2
581,549 - 9921 mRNA_1553 0.73 -0.9
581,563 + 9921 mRNA_1553 0.73 +0.1
581,682 + 9921 mRNA_1553 0.74 -0.4
581,703 - 9921 mRNA_1553 0.75 +0.1
581,706 + 9921 mRNA_1553 0.75 -2.2
581,715 + 9921 mRNA_1553 0.75 -1.0
581,719 + 9921 mRNA_1553 0.75 -1.3
581,809 - 9921 mRNA_1553 0.76 -4.2
581,847 - 9921 mRNA_1553 0.76 -0.7
581,851 - 9921 mRNA_1553 0.76 -0.8
581,999 - 9921 mRNA_1553 0.78 -2.4
582,045 + 9921 mRNA_1553 0.79 +1.6
582,165 + 9921 mRNA_1553 0.80 -0.5
582,431 - 9921 mRNA_1553 0.84 +0.9
582,599 + 9921 mRNA_1553 0.86 -2.0
583,151 + +1.6
583,765 - -0.6
583,853 + -0.1
584,014 + 9922 mRNA_1554 0.20 -1.3
584,185 - 9922 mRNA_1554 0.39 -0.8
584,209 + 9922 mRNA_1554 0.42 -1.1

Or see this region's nucleotide sequence