Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1560

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9927 and 9928 are separated by 196 nucleotides9928 and 9929 are separated by 360 nucleotides mRNA_1559: 9927 - Hypothetical Protein, at 594,333 to 596,246 9927 mRNA_1560: 9928 - HMMPfam-Bromodomain-PF00439,ProSiteProfiles-Bromodomain profile.-PS50014,SMART-bromo domain-SM00297,SUPERFAMILY--SSF47370, at 596,443 to 598,270 9928 mRNA_1561: 9929 - K01920 gshB, GSS glutathione synthase, at 598,631 to 600,413 9929

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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596,116 - -3.1
596,310 - -3.2
596,323 + -1.9
596,323 + -0.6
596,417 + -2.3
596,419 + +1.4
596,424 + -2.1
596,608 - -1.6
596,814 + 9928 mRNA_1560 0.20 -2.3
597,038 + 9928 mRNA_1560 0.33 -2.2
597,579 + 9928 mRNA_1560 0.62 +0.5
598,006 - 9928 mRNA_1560 0.86 -2.3
598,006 - 9928 mRNA_1560 0.86 -2.7
598,146 + +0.1
598,308 - +1.0
598,425 - -1.0
598,439 + -2.1
598,441 + -0.7
598,563 - -0.0
598,586 + -1.1
598,589 - -2.3
598,592 + -3.5
598,624 + -1.2

Or see this region's nucleotide sequence