Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1565

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9933 and 9934 are separated by 834 nucleotides mRNA_1565: 9933 - KOG1860 Nuclear protein export factor, at 604,614 to 609,512 9933 mRNA_1566: 9934 - Hypothetical Protein, at 610,347 to 612,663 9934

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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603,676 + +0.4
603,816 - -1.7
603,909 + -1.2
604,112 + +0.1
604,385 - -0.2
604,470 - +0.2
604,472 + -0.8
604,513 + -0.5
609,600 + -1.8
609,605 - -3.0
609,606 - +1.1
609,611 + -1.6
609,612 + -3.6
609,613 - -1.0
609,619 - -0.9
609,770 - -0.5
609,782 + -1.9
609,788 - -0.1
609,806 - -0.5
609,907 - -0.9
609,918 + -2.6
609,936 - -2.2
609,946 + -0.6
609,948 + -2.8
609,968 + -0.1
610,067 + -0.8
610,069 - -0.9
610,075 - -2.1
610,083 + -1.0
610,227 + -1.2
610,264 + -0.2
610,265 + -0.5
610,375 - -0.9
610,376 + -0.4

Or see this region's nucleotide sequence