Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1594

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9962 and 9963 are separated by 308 nucleotides mRNA_1594: 9962 - K16261 YAT yeast amino acid transporter, at 681,003 to 683,049 9962 mRNA_1595: 9963 - K13342 PEX5, PXR1 peroxin-5, at 683,358 to 685,744 9963

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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680,012 - -1.1
680,013 + -3.1
680,015 + -0.1
680,026 + -2.5
680,033 - -1.4
680,033 - -1.1
680,038 + -3.4
680,041 + -1.8
680,045 - -1.8
680,048 - -1.2
680,052 + -2.8
680,064 + +0.1
680,126 + -0.8
680,136 - -0.5
680,136 - -1.7
680,137 + +0.7
680,137 - -0.3
680,147 + -1.4
680,208 - -2.6
680,245 - -3.4
680,280 - -0.9
680,297 - -1.1
680,308 - -0.2
680,310 - -0.9
680,310 - -2.2
680,317 - -1.2
680,321 + +2.1
680,327 + -1.0
680,357 - +0.8
680,369 + -2.5
680,377 + -2.4
680,395 + -1.4
680,405 - -2.7
680,423 - +0.6
680,454 + -2.0
680,460 + -0.1
680,486 - -2.0
680,493 - -0.9
680,529 + +0.3
680,915 - +1.7
680,921 + -0.6
680,987 + -0.1
681,078 - -1.3
681,208 + 9962 mRNA_1594 0.10 -3.1
681,222 + 9962 mRNA_1594 0.11 -0.8
681,534 - 9962 mRNA_1594 0.26 -3.3
681,914 + 9962 mRNA_1594 0.45 -0.7
681,942 + 9962 mRNA_1594 0.46 -1.7
681,955 + 9962 mRNA_1594 0.47 -1.6
682,073 + 9962 mRNA_1594 0.52 -2.1
682,250 - 9962 mRNA_1594 0.61 +0.5
682,407 - 9962 mRNA_1594 0.69 +1.1
682,409 + 9962 mRNA_1594 0.69 -2.9
682,507 + 9962 mRNA_1594 0.73 -1.3
682,560 - 9962 mRNA_1594 0.76 -0.0
682,689 - 9962 mRNA_1594 0.82 -0.3
682,838 - 9962 mRNA_1594 0.90 -3.6
682,839 - 9962 mRNA_1594 0.90 -1.3
682,861 + -1.9
682,877 + -2.7
682,881 + -0.4
682,979 + -2.2
683,015 + -1.9
683,122 - -1.2
683,122 - -0.7
683,251 + -0.2
683,542 - +0.6

Or see this region's nucleotide sequence