Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1608

Experiment: 40 hrs No Buoyancy Separation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9975 and 9976 are separated by 319 nucleotides mRNA_1607: 9975 - HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 706,172 to 709,618 9975 mRNA_1608: 9976 - K19704 PTC1 protein phosphatase PTC1, at 709,938 to 711,637 9976

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
remove
709,019 + 9975 mRNA_1607 0.83 -2.0
709,049 + 9975 mRNA_1607 0.83 -1.9
709,085 - 9975 mRNA_1607 0.85 -2.3
709,149 + 9975 mRNA_1607 0.86 -2.9
709,206 - 9975 mRNA_1607 0.88 -0.8
709,291 - -2.6
709,324 + -3.3
709,332 + -2.3
709,450 + +0.0
709,501 - -0.6
709,617 + -0.6
709,624 - -2.2
709,633 + -2.4
709,671 - -1.3
709,687 - -0.9
709,696 + -3.5
709,724 + -2.1
709,813 + +0.4
709,926 + -0.6
709,949 + -2.5
710,068 + -0.8
710,082 + -1.1
710,161 - 9976 mRNA_1608 0.13 -3.5
710,204 + 9976 mRNA_1608 0.16 -2.2
710,206 + 9976 mRNA_1608 0.16 -2.0
710,536 + 9976 mRNA_1608 0.35 -1.6
711,090 + 9976 mRNA_1608 0.68 -1.9
711,117 + 9976 mRNA_1608 0.69 -2.9
711,407 - 9976 mRNA_1608 0.86 -3.0
711,525 + +0.1
711,668 + -0.5
711,678 + -0.6
711,690 + -0.2
711,835 + -0.3
711,840 + -1.9
711,841 - +1.2
711,871 + -1.3
711,888 - -0.2
711,950 + -1.7
712,007 - +1.4
712,142 - -0.2

Or see this region's nucleotide sequence