Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1610

Experiment: 40 hrs No Buoyancy Separation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9978 and 9979 are separated by 144 nucleotides mRNA_1610: 9978 - HMMPfam-CrcB-like protein-PF02537, at 714,472 to 715,757 9978 mRNA_1611: 9979 - K04708 E1.1.1.102 3-dehydrosphinganine reductase, at 715,902 to 717,266 9979

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
remove
714,074 + -0.0
714,536 - +0.2
715,014 + 9978 mRNA_1610 0.42 -0.4
715,262 + 9978 mRNA_1610 0.61 -2.8
715,527 + 9978 mRNA_1610 0.82 -2.4
715,563 - 9978 mRNA_1610 0.85 -1.1
715,584 + 9978 mRNA_1610 0.86 -0.6
715,629 - -0.8
715,700 + -2.1
715,834 + -1.3
715,854 + -0.8
715,859 + -0.9
715,859 + -0.7
715,996 + -2.8

Or see this region's nucleotide sequence