Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1627

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9994 and 9995 are separated by 228 nucleotides9995 and 9996 are separated by 207 nucleotides mRNA_1626: 9994 - Hypothetical Protein, at 750,796 to 751,505 9994 mRNA_1627: 9995 - K18551 SDT1 pyrimidine and pyridine-specific 5'-nucleotidase, at 751,734 to 753,010 9995 mRNA_1628: 9996 - Hypothetical Protein, at 753,218 to 753,980 9996

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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750,797 - -1.5
750,825 + -3.3
750,992 - 9994 mRNA_1626 0.28 -1.5
750,993 + 9994 mRNA_1626 0.28 -1.2
751,044 + 9994 mRNA_1626 0.35 -2.4
751,155 + 9994 mRNA_1626 0.51 -0.3
751,328 + 9994 mRNA_1626 0.75 -3.2
751,597 - +0.1
751,614 + -1.1
752,068 + 9995 mRNA_1627 0.26 +0.4
752,287 - 9995 mRNA_1627 0.43 -2.2
753,045 + -2.6
753,046 - -2.6
753,203 + -0.2
753,207 + -0.5
753,218 + -2.3
753,219 - +0.1
753,236 - -2.2
753,507 + 9996 mRNA_1628 0.38 -2.5
753,819 - 9996 mRNA_1628 0.79 -0.6

Or see this region's nucleotide sequence