Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1648

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10015 and 10016 are separated by 461 nucleotides10016 and 10017 are separated by 131 nucleotides mRNA_1647: 10015 - K02930 RP-L4e, RPL4 large subunit ribosomal protein L4e, at 800,171 to 801,820 10015 mRNA_1648: 10016 - K11436 PRMT3 type I protein arginine methyltransferase, at 802,282 to 804,374 10016 mRNA_1649: 10017 - KOG2495 NADH-dehydrogenase (ubiquinone), at 804,506 to 806,689 10017

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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804,389 - +0.6
804,517 - -2.4
804,798 + 10017 mRNA_1649 0.13 -1.7
804,861 - 10017 mRNA_1649 0.16 +1.2
805,017 - 10017 mRNA_1649 0.23 -0.5

Or see this region's nucleotide sequence