Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1657

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10024 and 10025 are separated by 489 nucleotides mRNA_1656: 10024 - HMMPfam-Universal stress protein family-PF00582,PRINTS-Universal stress protein signature-PR01438,SUPERFAMILY--SSF52402, at 821,084 to 822,700 10024 mRNA_1657: 10025 - K08286 E2.7.11.- protein-serine/threonine kinase, at 823,190 to 825,684 10025

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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822,768 - -0.6
822,774 + +0.4
822,783 + -0.6
822,790 - +0.2
822,916 + -1.7
822,918 - +0.3
822,925 + +2.2
822,933 - -0.4
823,236 + -3.4
824,343 + 10025 mRNA_1657 0.46 -3.8
825,060 + 10025 mRNA_1657 0.75 -3.2
825,215 - 10025 mRNA_1657 0.81 -3.5
825,385 + 10025 mRNA_1657 0.88 -3.3
825,493 - -3.7
825,974 - -0.0
826,107 + +1.5
826,109 - -1.2
826,116 + +1.1
826,139 - -0.9
826,260 + +0.3
826,273 + -0.2
826,442 + +0.3
826,452 - +0.3
826,454 + +1.3
826,456 + -0.4
826,462 - -1.5
826,463 - -0.3
826,464 + +0.5
826,464 + -1.2
826,469 + -0.3
826,575 - -0.3
826,590 + +0.3
826,598 - -0.1
826,601 + +0.0
826,618 + +0.4
826,624 + -0.0

Or see this region's nucleotide sequence