Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1706

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10074 and 10075 overlap by 4 nucleotides mRNA_1706: 10074 - K08286 E2.7.11.- protein-serine/threonine kinase, at 343 to 1,191 10074 mRNA_1707: 10075 - BLAST related to SNF1-related protein kinase KIN10 [Melanop..., at 1,188 to 2,835 10075

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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26 + +0.1
27 + +1.5
28 + -0.4
31 + +0.3
31 + +1.1
41 + +0.4
66 + -2.6
72 - +0.7
72 - -0.3
93 + +0.5
104 + +1.3
105 + -0.1
108 + +0.2
120 - +0.5
128 + -0.0
135 - -1.2
136 + +0.0
136 - -1.4
137 - +2.1
137 - +0.1
138 + +0.2
139 + +0.7
141 - -0.5
150 - +0.2
151 - +0.5
155 + +0.9
155 + +1.5
156 + -1.0
158 + +0.0
173 - +0.6
175 + +2.1
180 - -1.0
215 + -0.3
220 - -0.2
234 + +0.2
254 - +0.3
283 + +0.9
304 + -0.4
322 + +0.2
324 + +0.1
427 + +0.0
453 + 10074 mRNA_1706 0.13 -0.1
465 - 10074 mRNA_1706 0.14 +0.8
482 + 10074 mRNA_1706 0.16 -0.0
493 - 10074 mRNA_1706 0.18 +0.2
647 + 10074 mRNA_1706 0.36 -1.3
683 - 10074 mRNA_1706 0.40 -0.4
809 + 10074 mRNA_1706 0.55 +0.4
842 - 10074 mRNA_1706 0.59 -1.2
844 + 10074 mRNA_1706 0.59 -1.0
848 - 10074 mRNA_1706 0.59 -1.4
902 + 10074 mRNA_1706 0.66 -0.8
949 - 10074 mRNA_1706 0.71 -0.0
949 - 10074 mRNA_1706 0.71 -2.0
950 + 10074 mRNA_1706 0.71 -0.6
974 - 10074 mRNA_1706 0.74 -0.3
1,016 + 10074 mRNA_1706 0.79 -1.0
1,065 + 10074 mRNA_1706 0.85 -1.5
1,118 + -1.3
1,142 + -1.8
1,155 + -1.2
1,272 - -1.9
1,281 + -0.7
1,573 + 10075 mRNA_1707 0.23 +0.5
1,625 + 10075 mRNA_1707 0.27 -0.2
1,625 + 10075 mRNA_1707 0.27 -0.8
1,628 + 10075 mRNA_1707 0.27 +0.7
1,646 + 10075 mRNA_1707 0.28 -0.2
1,649 - 10075 mRNA_1707 0.28 +0.1
1,680 + 10075 mRNA_1707 0.30 -1.2
1,781 + 10075 mRNA_1707 0.36 -0.7
1,926 + 10075 mRNA_1707 0.45 +0.1
1,996 + 10075 mRNA_1707 0.49 -0.5
2,005 - 10075 mRNA_1707 0.50 -1.8
2,010 - 10075 mRNA_1707 0.50 -0.3
2,033 + 10075 mRNA_1707 0.51 -1.0
2,068 + 10075 mRNA_1707 0.53 -0.7
2,076 + 10075 mRNA_1707 0.54 +0.8

Or see this region's nucleotide sequence