Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1722

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10089 and 10090 are separated by 540 nucleotides mRNA_1721: 10089 - K11483 HOS2 histone deacetylase HOS2, at 32,428 to 34,334 10089 mRNA_1722: 10090 - KOG0065 Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily, at 34,875 to 37,390 10090

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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34,606 + +0.3
34,704 + +1.3
34,710 + +0.3
34,717 + -0.8
34,753 - -1.1
34,868 + -0.7
34,948 - -1.3
35,013 - +0.4
35,040 + +0.6
35,159 - 10090 mRNA_1722 0.11 -1.2
35,168 + 10090 mRNA_1722 0.12 -1.0
35,466 + 10090 mRNA_1722 0.23 +0.2
35,672 + 10090 mRNA_1722 0.32 -0.6
35,841 + 10090 mRNA_1722 0.38 -0.0
36,014 + 10090 mRNA_1722 0.45 -0.1
36,174 - 10090 mRNA_1722 0.52 +0.1
36,204 + 10090 mRNA_1722 0.53 -0.1
36,285 + 10090 mRNA_1722 0.56 -0.2
36,292 + 10090 mRNA_1722 0.56 -0.4
36,324 + 10090 mRNA_1722 0.58 +0.3
36,375 + 10090 mRNA_1722 0.60 +0.1
36,465 + 10090 mRNA_1722 0.63 +1.3
36,602 + 10090 mRNA_1722 0.69 -0.2
36,611 + 10090 mRNA_1722 0.69 +0.6
36,720 - 10090 mRNA_1722 0.73 -0.1
36,746 + 10090 mRNA_1722 0.74 +1.2
36,965 + 10090 mRNA_1722 0.83 -1.7
37,032 - 10090 mRNA_1722 0.86 +1.2
37,050 - 10090 mRNA_1722 0.86 -0.1
37,145 + -0.8
37,166 + +0.2
37,194 - +0.8
37,194 + +0.8
37,356 + +0.5
37,457 + +0.2
37,470 + +1.3
37,473 + -1.4
37,476 + +0.1
37,481 + +0.3
37,501 + -1.6
37,595 + -0.2
37,628 + +0.2
37,631 + -0.7
37,660 + +1.1
37,703 - -0.8
37,717 - +0.1
37,735 - +1.2
37,831 - +0.4
37,837 + +3.1
37,921 - +0.3
37,933 - -1.6
37,934 + -1.5
37,934 + +0.2
37,938 + -0.9
37,950 - -1.7
37,951 + -0.7
37,984 - -0.2
38,063 + +0.4
38,063 - -0.5
38,074 - -0.4
38,075 - +0.2
38,083 + +1.5
38,091 - +0.5
38,140 - +0.2
38,248 - +0.0
38,249 - +1.1
38,366 + +1.7
38,384 + -0.8

Or see this region's nucleotide sequence