Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1732

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10099 and 10100 are separated by 288 nucleotides10100 and 10101 are separated by 382 nucleotides mRNA_1731: 10099 - Hypothetical Protein, at 62,090 to 63,277 10099 mRNA_1732: 10100 - Hypothetical Protein, at 63,566 to 64,770 10100 mRNA_1733: 10101 - KOG1021 Acetylglucosaminyltransferase EXT1/exostosin 1, at 65,153 to 66,958 10101

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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62,766 + 10099 mRNA_1731 0.57 +1.1
62,808 - 10099 mRNA_1731 0.60 +0.0
62,946 - 10099 mRNA_1731 0.72 -1.9
63,340 - +1.5
63,378 + -0.6
63,394 + -1.4
63,397 - -0.0
63,683 + +0.0
63,707 + 10100 mRNA_1732 0.12 -2.4
63,954 - 10100 mRNA_1732 0.32 -1.0
64,217 + 10100 mRNA_1732 0.54 -0.4
64,217 + 10100 mRNA_1732 0.54 +0.3
64,240 - 10100 mRNA_1732 0.56 -0.3
64,534 + 10100 mRNA_1732 0.80 -2.0
64,623 + 10100 mRNA_1732 0.88 +0.7
64,678 - -0.4
64,684 - +0.0
64,984 - -0.1
65,387 - 10101 mRNA_1733 0.13 -0.1
65,397 + 10101 mRNA_1733 0.14 +1.4
65,588 - 10101 mRNA_1733 0.24 +0.4
65,608 + 10101 mRNA_1733 0.25 -1.1
65,620 + 10101 mRNA_1733 0.26 +1.3

Or see this region's nucleotide sequence