Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1775

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10142 and 10143 are separated by 285 nucleotides10143 and 10144 are separated by 983 nucleotides mRNA_1774: 10142 - Hypothetical Protein, at 173,181 to 173,906 10142 mRNA_1775: 10143 - KOG1289 Amino acid transporters, at 174,192 to 176,320 10143 mRNA_1776: 10144 - K01869 LARS, leuS leucyl-tRNA synthetase, at 177,304 to 181,065 10144

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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173,224 + -0.4
173,309 - 10142 mRNA_1774 0.18 +0.7
173,366 + 10142 mRNA_1774 0.25 +0.2
173,398 + 10142 mRNA_1774 0.30 +2.8
173,504 + 10142 mRNA_1774 0.44 -0.0
173,512 + 10142 mRNA_1774 0.46 -0.1
173,596 + 10142 mRNA_1774 0.57 +2.4
173,634 + 10142 mRNA_1774 0.62 +0.3
173,650 + 10142 mRNA_1774 0.65 +0.2
173,899 - -0.0
173,986 + +1.5
174,073 - -0.1
174,104 - +0.2
174,126 + +0.2
174,238 + -0.8
174,377 + +0.3
174,562 - 10143 mRNA_1775 0.17 -0.0
174,565 + 10143 mRNA_1775 0.18 +0.9
175,104 - 10143 mRNA_1775 0.43 +0.3
175,249 - 10143 mRNA_1775 0.50 -0.5
175,290 - 10143 mRNA_1775 0.52 +0.1
175,297 + 10143 mRNA_1775 0.52 -0.1
175,464 - 10143 mRNA_1775 0.60 +0.4
175,541 - 10143 mRNA_1775 0.63 +0.7
175,853 - 10143 mRNA_1775 0.78 +0.9
175,873 + 10143 mRNA_1775 0.79 +0.2
175,963 - 10143 mRNA_1775 0.83 -1.4
175,969 + 10143 mRNA_1775 0.83 -0.9
176,010 - 10143 mRNA_1775 0.85 -0.0
176,089 - 10143 mRNA_1775 0.89 +0.2
176,151 + -0.4
176,265 + -0.2
176,295 - +1.1
176,309 - +0.3
176,401 - -0.2
176,432 + +1.8
176,432 - +0.0
176,441 - +1.1
176,442 + +0.8
176,459 + -0.4
176,471 - +0.2
176,473 - -0.4
176,499 + +0.5
176,515 + +0.8
176,516 + -0.3
176,517 - +1.4
176,527 + +0.2
176,572 + -1.5
176,575 - -0.9
176,680 + +1.4
176,723 - -0.0
176,749 - -0.3
176,889 + +0.6
177,019 - +0.9
177,025 - -0.2
177,038 + +0.1
177,050 + +0.0
177,064 - +0.2
177,200 - +1.7
177,201 + +0.6

Or see this region's nucleotide sequence